STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcb10ATP-binding cassette, sub-family B (MDR/TAP), member 10. (712 aa)    
Predicted Functional Partners:
LOC108248833
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
 
    
 0.755
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.690
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
  
 0.667
LOC108236588
Solute carrier family 25 member 37; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.657
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
      
 0.564
LOC108242677
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.563
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.547
abcf1
ATP-binding cassette, sub-family F (GCN20), member 1.
  
 
0.500
ENSKMAP00000001971
THAP-type domain-containing protein.
      
 0.491
LOC108251716
ATP-binding cassette, sub-family G (WHITE), member 2a.
  
0.458
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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