STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108244370Basic helix-loop-helix family, member e40. (406 aa)    
Predicted Functional Partners:
LOC108251202
Nuclear receptor subfamily 1, group d, member 1.
      
 0.480
LOC108241809
Period circadian clock 1b.
   
 0.479
psmb2
Proteasome subunit beta.
      
 0.476
PER2
Period circadian regulator 2.
   
 0.461
LOC108239667
Period circadian clock 2.
   
 0.461
LOC108229360
Period circadian clock 3.
   
 0.427
rorb
RAR-related orphan receptor B.
    
 
 0.418
LOC108249639
Nuclear receptor subfamily 1, group D, member 2b.
   
 
 0.404
LOC108243298
Nuclear receptor subfamily 1, group D, member 2a.
   
 
 0.404
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.