STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108238029Solute carrier family 22 member 5. (538 aa)    
Predicted Functional Partners:
LOC108237977
Solute carrier family 7 member 2.
   
 
 0.673
cacnb4
Calcium channel, voltage-dependent, beta 4a subunit.
      
 0.565
nup35
Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.
      
 0.563
picalm
Phosphatidylinositol binding clathrin assembly protein b.
      
 0.563
zbtb20
Zinc finger and BTB domain containing 20.
    
 
 0.562
ints9
Integrator complex subunit 9.
    
 0.487
ints1
Integrator complex subunit 1.
    
 0.476
ints11
Integrator complex subunit 11.
    
 0.472
ints4
Integrator complex subunit 4.
    
 0.464
ints3
Integrator complex subunit 3.
    
 0.460
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.