STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108244986Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family. (394 aa)    
Predicted Functional Partners:
LOC108242801
Histone H2A; Belongs to the histone H2A family.
   
 
 0.819
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.819
ipo9
Importin 9.
   
 
 0.813
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
 
 0.792
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.776
sdad1
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
    
 
 0.752
rpl39
Ribosomal protein L39.
   
 
 0.726
pim3
Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.
    
 
 0.692
LOC108247370
Calcium channel, voltage dependent, alpha2/delta subunit 3.
      
 0.679
CACNA2D3
Calcium voltage-gated channel auxiliary subunit alpha2delta 3.
      
 0.679
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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