STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108240425Desmin a; Belongs to the intermediate filament family. (493 aa)    
Predicted Functional Partners:
LOC108233017
Von Willebrand factor A domain containing 1.
   
 
 0.519
LOC108250511
Uncharacterized protein.
   
 0.507
LOC108246234
Uncharacterized protein.
   
 0.507
LOC108233898
Barrier to autointegration factor 1.
   
 0.507
LOC108230019
Repulsive guidance molecule BMP co-receptor a.
      
 0.491
nes
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
0.458
tcap
Titin-cap (telethonin).
   
 
 0.437
lemd3
LEM domain containing 3.
   
 0.428
ENSKMAP00000019578
Uncharacterized protein.
   
 0.428
rbm39
RNA binding motif protein 39b.
   
 0.428
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.