STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108243427Zinc finger, RAN-binding domain containing 1b. (775 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.827
rps27a
Ribosomal protein S27a.
   
 0.811
ubb
Uncharacterized protein.
   
 0.800
ubxn7
UBX domain protein 7.
   
 
 0.767
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.765
tnip1
TNFAIP3 interacting protein 1.
   
 0.666
ENSKMAP00000020815
APC_N_CC domain-containing protein.
    
  0.618
apc2
APC regulator of WNT signaling pathway 2.
    
  0.618
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.523
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.470
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.