STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aassAminoadipate-semialdehyde synthase. (930 aa)    
Predicted Functional Partners:
LOC108240593
5-phosphohydroxy-L-lysine phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.937
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
    
 0.933
sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 0.867
azin1
Antizyme inhibitor 1a; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.859
odc1
Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.859
LOC108242008
Antizyme inhibitor 1b; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.859
btd
Biotinidase.
  
 
 0.822
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 
 0.801
LOC108249655
Malate synthase-like.
  
  
 0.732
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.707
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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