STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000028257Collagen IV NC1 domain-containing protein. (207 aa)    
Predicted Functional Partners:
cd44
CD44 molecule (Indian blood group) b.
    
 0.901
ENSKMAP00000030115
Si:dkey-21p1.3.
 
 
 
  0.901
LOC108236977
Collagen, type X, alpha 1a.
 
      0.899
col9a3
Collagen, type IX, alpha 3.
 
 
    0.894
ENSKMAP00000021275
Si:dkey-117n7.4.
 
   
  0.884
col9a2
Procollagen, type IX, alpha 2.
 
 
 
  0.873
LOC108233955
Collagen, type IX, alpha 1b.
 
      0.870
LOC108234119
Zmp:0000000760.
 
      0.870
Col24a1
LAM_G_DOMAIN domain-containing protein.
 
 
 
 0.832
LOC108233705
Collagen, type I, alpha 1a.
 
   
  0.816
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.