STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108230209Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. (177 aa)    
Predicted Functional Partners:
ncoa4
Nuclear receptor coactivator 4.
     
 0.906
mvd
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
      
 0.668
gak
Cyclin G associated kinase.
     
 0.598
LOC108229902
Tetraspanin.
      
 0.563
LOC108237004
Peroxiredoxin 4.
  
  
 0.473
cebpa
CCAAT/enhancer-binding protein.
   
  
 0.428
dennd10
DENN domain containing 10.
  
  
 0.416
LOC108238211
Peroxiredoxin 1.
  
  
 0.416
LOC108238273
Thioredoxin domain-containing protein.
  
  
 0.416
LOC108238283
Thioredoxin domain-containing protein.
  
  
 0.416
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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