STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108241559Uncharacterized protein. (560 aa)    
Predicted Functional Partners:
LOC108228989
Uncharacterized protein.
   
 
 0.607
PUF60
Poly-U binding splicing factor b.
   
 
 0.607
parn
Poly(A)-specific ribonuclease (deadenylation nuclease).
   
 0.554
LOC108230630
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.500
ENSKMAP00000021613
Decapping mRNA 2.
     
 0.460
exosc2
Exosome component 2.
   
  0.460
LOC108248453
QKI, KH domain containing, RNA binding 2.
   
 
 0.451
LOC108235895
QKI, KH domain containing, RNA binding a.
   
 
 0.451
exosc3
Exosome component 3.
   
 
 0.446
exosc5
Exosome component 5.
   
 
 0.442
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.