STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108242643Transporter associated with antigen processing, subunit type a. (718 aa)    
Predicted Functional Partners:
LOC108242677
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.968
LOC108245991
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
  
 
0.967
LOC108230540
Calreticulin.
   
 0.946
pdia3
Protein disulfide-isomerase.
   
 0.941
LOC108243891
Protein disulfide-isomerase.
   
 0.922
LOC108250652
Transporter associated with antigen processing, subunit type t, teleost specific.
  
  
 
0.904
LOC108242639
Proteasome subunit beta 12.
 
 
 0.809
LOC108242638
Proteasome subunit beta.
 
 
 0.733
LOC108238608
Proteasome subunit beta.
 
 
 0.716
LOC108242642
Proteasome subunit beta.
 
 
 0.657
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.