STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108236268Uncharacterized protein. (650 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.950
LOC108234478
Uncharacterized protein.
    
 0.950
LOC108240957
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.950
sorl1
Sortilin-related receptor, L(DLR class) A repeats containing.
    
 
 0.849
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.812
igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.803
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.719
lin52
Lin-52 DREAM MuvB core complex component.
      
 0.664
ogfod3
Urotensin-2 receptor 2.
      
 0.664
rapgefl1
Rap guanine nucleotide exchange factor (GEF)-like 1.
      
 0.664
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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