STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108229854Uncharacterized protein. (1053 aa)    
Predicted Functional Partners:
cgnl1
Cingulin-like 1.
  
  
 
0.908
LOC108230036
Tight junction protein 1b; Belongs to the MAGUK family.
     
  0.900
LOC108251409
Tight junction protein 1a; Belongs to the MAGUK family.
     
  0.900
ARHGEF2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
     
  0.900
plk4
Polo-like kinase 4 (Drosophila).
   
 0.401
PLK1
Serine/threonine-protein kinase PLK.
   
 0.401
plk3
Serine/threonine-protein kinase PLK.
   
 0.401
plk2
Serine/threonine-protein kinase PLK.
   
 0.401
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.