STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem209Transmembrane protein 209. (558 aa)    
Predicted Functional Partners:
ccdc58
Coiled-coil domain containing 58.
      
 0.588
apopt1
Cytochrome c oxidase assembly factor 8.
      
 0.570
lyrm7
LYR motif containing 7.
      
 0.491
pum3
Pumilio RNA-binding family member 3.
      
 0.489
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
      
 0.439
nup43
Nucleoporin 43.
   
  
 0.438
LOC108238306
Uridine-cytidine kinase; Belongs to the uridine kinase family.
      
 0.437
uck1
Uridine-cytidine kinase; Belongs to the uridine kinase family.
      
 0.437
tmem201
Transmembrane protein 201.
   
  
 0.420
abhd10
Transgelin 3b.
      
 0.410
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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