STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scg5Secretogranin V. (223 aa)    
Predicted Functional Partners:
pcsk2
Proprotein convertase subtilisin/kexin type 2; Belongs to the peptidase S8 family.
   
 
 0.869
arhgap11b
Rho-GAP domain-containing protein.
 
    
 0.772
scg3
Secretogranin III.
   
  
 0.714
LOC108245540
Secretogranin II (chromogranin C), b.
   
  
 0.699
arhgap11a
Rho GTPase activating protein 11A.
 
    
 0.659
LOC108230278
Retinol dehydrogenase 12, like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.636
cpe
Carboxypeptidase E.
   
  
 0.594
FMN1
Formin 1.
      
 0.563
pam
Peptidylglycine alpha-amidating monooxygenase.
   
  
 0.536
pcsk7
Proprotein convertase subtilisin/kexin type 7; Belongs to the peptidase S8 family.
   
 
 0.508
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.