STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108230540Calreticulin. (437 aa)    
Predicted Functional Partners:
LOC108242677
TAP binding protein (tapasin), tandem duplicate 2.
    
 0.997
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.991
pdia3
Protein disulfide-isomerase.
   
 0.991
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 0.974
LOC108243891
Protein disulfide-isomerase.
   
 0.969
LOC108242636
Ig-like domain-containing protein; Belongs to the MHC class I family.
    
 0.969
pdia6
Protein disulfide isomerase family A, member 6; Belongs to the protein disulfide isomerase family.
   
 0.958
LOC108245991
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 0.949
LOC108250652
Transporter associated with antigen processing, subunit type t, teleost specific.
   
 0.946
LOC108242643
Transporter associated with antigen processing, subunit type a.
   
 0.946
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.