STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
faf1Fas (TNFRSF6) associated factor 1. (671 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 
0.982
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.979
ubxn1
UBX domain protein 1.
   
 
 0.976
ubxn6
UBX domain protein 6.
    
 
 0.967
LOC108243471
Uncharacterized protein.
    
 0.967
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.965
fadd
Uncharacterized protein.
   
 0.951
btbd9
BTB (POZ) domain containing 9.
    
   0.941
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.931
LOC108241508
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.931
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.