STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T6J4.10Protein kinase superfamily protein. (834 aa)    
Predicted Functional Partners:
STA1
Protein STABILIZED1; Pre-mRNA splicing factor required for splicing and for the turnover of unstable transcripts. May be a U5 snRNP-associated protein involved in the formation of U4/U6-U5 tri-snRNP. Involved in responses to abiotic stresses. Involved in microRNAs (miRNAs) biogenesis by functioning in primary miRNAs (pri-miRNAs) splicing. Required for DNA methylation and transcriptional silencing through the RNA-directed DNA methylation (RdDM) pathway.
    
 
 0.919
SAC3C
SAC3 family protein C; Possible component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery.
   
  
 0.902
MSJ1.11
Nuclear protein-like.
   
 
 0.840
SMU1
Suppressor of mec-8 and unc-52 protein homolog 1; Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development. Required for proper accumulation of SMU2.
   
 
 0.836
SAC3A
SAC3 family protein A; Component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export- competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery.
   
  
 0.829
SAC3B
SAC3 family protein B; Component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export- competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery. Belongs to the SAC3 family.
   
  
 0.809
F9L1.14
Protein-protein interaction regulator family protein.
   
 0.807
T13D8.9
Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein.
   
  0.807
PRP40C
Pre-mRNA-processing protein 40C; Binds the phosphorylated C-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries (Probable). May be involved in pre-mRNA splicing (Probable); Belongs to the PRPF40 family.
   
 0.806
F7H2.18
Transducin/WD40 repeat-like superfamily protein.
      
 0.791
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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