node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CYCH1-1 | F6I18.270 | Q8W5S1 | O65567 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | 0.999 |
CYCH1-1 | GTF2H2 | Q8W5S1 | Q9ZVN9 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFII [...] | 0.999 |
CYCH1-1 | K15N18.8 | Q8W5S1 | A0A1P8BGR8 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | Myb-like protein X. | 0.972 |
CYCH1-1 | NRPB11 | Q8W5S1 | Q38859 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | DNA-directed RNA polymerases II, IV and V subunit 11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB11 is part of the core element with the central large cleft. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) [...] | 0.989 |
CYCH1-1 | NRPB4 | Q8W5S1 | O48890 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | DNA-directed RNA polymerase II subunit 4; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. | 0.994 |
CYCH1-1 | RAP74 | Q8W5S1 | Q9SU25 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation (By similarity); Belongs to the TFIIF alpha subunit family. | 0.988 |
CYCH1-1 | TFB2 | Q8W5S1 | Q680U9 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | General transcription and DNA repair factor IIH subunit TFB2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been [...] | 0.999 |
CYCH1-1 | TFB4 | Q8W5S1 | Q8LF41 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | General transcription and DNA repair factor IIH subunit TFB4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been [...] | 0.999 |
CYCH1-1 | UVH3 | Q8W5S1 | Q9ATY5 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | DNA repair protein UVH3; Putative single-stranded DNA endonuclease involved in nucleotide excision repair (NER) of UV- and oxidative damaged DNA. May make the 3'-incision step in NER. Seems to play a role in senescence program; Belongs to the XPG/RAD2 endonuclease family. XPG subfamily. | 0.782 |
CYCH1-1 | XPD | Q8W5S1 | Q8W4M7 | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | General transcription and DNA repair factor IIH helicase subunit XPD; ATP-dependent 5'-3' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATP-dependent helicase activity of XPD is required for DNA opening. In tran [...] | 0.999 |
F6I18.270 | CYCH1-1 | O65567 | Q8W5S1 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases. | 0.999 |
F6I18.270 | GTF2H2 | O65567 | Q9ZVN9 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFII [...] | 0.999 |
F6I18.270 | K15N18.8 | O65567 | A0A1P8BGR8 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | Myb-like protein X. | 0.972 |
F6I18.270 | NRPB11 | O65567 | Q38859 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | DNA-directed RNA polymerases II, IV and V subunit 11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB11 is part of the core element with the central large cleft. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) [...] | 0.996 |
F6I18.270 | NRPB4 | O65567 | O48890 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | DNA-directed RNA polymerase II subunit 4; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. | 0.999 |
F6I18.270 | RAP74 | O65567 | Q9SU25 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation (By similarity); Belongs to the TFIIF alpha subunit family. | 0.997 |
F6I18.270 | TFB2 | O65567 | Q680U9 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | General transcription and DNA repair factor IIH subunit TFB2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been [...] | 0.999 |
F6I18.270 | TFB4 | O65567 | Q8LF41 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | General transcription and DNA repair factor IIH subunit TFB4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been [...] | 0.999 |
F6I18.270 | UVH3 | O65567 | Q9ATY5 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | DNA repair protein UVH3; Putative single-stranded DNA endonuclease involved in nucleotide excision repair (NER) of UV- and oxidative damaged DNA. May make the 3'-incision step in NER. Seems to play a role in senescence program; Belongs to the XPG/RAD2 endonuclease family. XPG subfamily. | 0.417 |
F6I18.270 | XPD | O65567 | Q8W4M7 | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. | General transcription and DNA repair factor IIH helicase subunit XPD; ATP-dependent 5'-3' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATP-dependent helicase activity of XPD is required for DNA opening. In tran [...] | 0.999 |