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AT1G04300 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04300" - TRAF-like superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G04300TRAF-like superfamily protein (1082 aa)    
Predicted Functional Partners:
AT3G03700
Plasma-membrane choline transporter family protein (482 aa)
           
  0.804
EMB3011
Embryo defective 3011; Involved in pre-mRNA splicing by mediating structural transitions of the spliceosome during the catalytic step. Facilitates expression of genes involved in auxin-mediated development including male-gametophyte transmission, apical-basal patterning of embryonic and gynoecium development, stamen development, phyllotactic flower positioning, and vascular development (PubMed-25384462). Also involved in root-meristem maintenance and planar polarity of root-hair positioning (PubMed-26237376). Acts as a component of RNA silencing that regulates distinct classes of endog [...] (1255 aa)
     
        0.716
AT1G32530
MND1-interacting protein 1 (711 aa)
     
   
  0.686
AT4G16150
Calmodulin binding;transcription regulators; Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5’- [ACG]CGCG[GTC]-3’. Activates the expression of the V-PPase proton pump in pollen (923 aa)
     
   
  0.655
SWEETIE
SWEETIE (2223 aa)
     
   
  0.640
RPL2
Nucleic acid-binding, OB-fold-like protein.[Source-TAIR;Acc-ATMG00560] (349 aa)
           
  0.637
AT5G64420
DNA polymerase V family (1306 aa)
           
  0.637
AT3G55700
UDP-glycosyltransferase-like protein (460 aa)
           
  0.637
TBL39
TRICHOME BIREFRINGENCE-LIKE 39; May be involved in the specific O-acetylation of cell wall polymers (367 aa)
           
  0.637
EIF3G1
Eukaryotic translation initiation factor 3G1; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. This subunit can bind 18S rRNA (321 aa)
           
  0.632
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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