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AT1G04360 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G04360" - RING/U-box superfamily protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G04360RING/U-box superfamily protein; Its function is described as zinc ion binding; Expressed in hypocotyl, root; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT5G43420.1); Has 9268 Blast hits to 9239 proteins in 300 species- Archae - 0; Bacteria - 0; Metazoa - 2276; Fungi - 656; Plants - 4907; Viruses - 85; Other Eukaryotes - 1344 (source- NCBI BLink) (381 aa)    
Predicted Functional Partners:
EDR1
Serine/threonine-protein kinase EDR1; MAPKKK serine/threonine-protein kinase involved in the regulation of a MAP kinase cascade (probably including MPK3 and MPK6) that negatively regulates salicylic acid- (SA-) dependent defense responses, abscisic acid (ABA) signaling, and ethylene- induced senescence. Modulates also stress response (e.g. drought) signaling and cell death, in an ORE9-dependent manner. Functions at a point of cross talk between ethylene, ABA and SA signaling that impinges on senescence and cell death. On the other hand, it confers sensitivity to various pathogens such [...] (933 aa)
       
 
  0.933
UBQ3
Polyubiquitin 3; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-11-linked is involved in ERAD (endoplasmi [...] (306 aa)
       
      0.701
KEG
Protein kinases;ubiquitin-protein ligases; Mediates E2-dependent protein ubiquitination. Acts as a negative regulator of abscisic acid signaling. Required for ABI5 degradation, by mediating its ubiquitination. Together with EDR1, may regulate endocytic trafficking and/or the formation of signaling complexes on trans-Golgi network (TGN)/ early endosome (EE) vesicles during stress responses (1625 aa)
       
 
  0.671
RHD3
Root hair defective 3 GTP-binding protein (RHD3); Probable GTP-binding protein involved in cell wall expansion. Required for appropriate root and root hair cells enlargement. May inhibit vacuole enlargement during root hair cell expansion. Plays a role in cell wall biosynthesis and actin organization. Seems to act independently from auxin and ethylene pathways. May regulate membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER); Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3-type GTPase family. RHD3 subfamily (802 aa)
     
   
  0.592
AT3G43910
Uncharacterized protein T15B3_50; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G26840.1); Has 680 Blast hits to 680 proteins in 17 species- Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 635 (source- NCBI BLink) (195 aa)
           
  0.546
AT2G26840
MutS2; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G43910.1) (326 aa)
           
  0.546
AT2G23400
Undecaprenyl pyrophosphate synthetase family protein; Contains the following InterPro domains- Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro-IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro-IPR001441); BEST Arabidopsis thaliana protein match is- cis-prenyltransferase (TAIR-AT2G23410.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink); Belongs to the UPP synthase family (253 aa)
           
  0.528
AT2G01440
ATP-dependent DNA helicase homolog RECG, chloroplastic; Critical role in recombination and DNA repair (973 aa)
           
  0.525
ALKBH2
Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Dioxygenase that repairs alkylated DNA containing 1- methyladenine and 1-ethenoadenine by oxidative demethylation. Accepts double-stranded and single-stranded substrates, with a preference for dsDNA over ssDNA. Confers resistance to methylating agents such as methylmethanesulphonate (MMS) (314 aa)
           
  0.476
AT1G01880
5’-3’ exonuclease family protein; Endonuclease which cleaves flap structures at the junction between single-stranded DNA and double-stranded DNA; Belongs to the XPG/RAD2 endonuclease family. GEN subfamily (599 aa)
           
  0.470
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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