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STRINGSTRING
MYB13 protein (Arabidopsis thaliana) - STRING interaction network
"MYB13" - Transcription factor MYB13 in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
MYB13Transcription factor MYB13; Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function. May play a role in tolerance to boric acid (246 aa)    
Predicted Functional Partners:
At1g47490
Polyadenylate-binding protein RBP47C; Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation (432 aa)
       
 
  0.648
At1g47500
Polyadenylate-binding protein RBP47C; Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation (434 aa)
       
 
  0.607
AT5G05790
Duplicated homeodomain-like superfamily protein; Contains the following InterPro domains- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609), SANT, eukarya (InterPro-IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro-IPR006447), SANT, DNA-binding (InterPro-IPR001005), Myb, DNA-binding (InterPro-IPR014778), Homeodomain-like (InterPro-IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro-IPR017930); BEST Arabidopsis thaliana protein match is- Duplicated homeodomain-like superfamily protein (TAIR-AT3G11280.2); Has 1807 Blast hits t [...] (277 aa)
     
   
  0.572
AT-HSFB2B
Winged-helix DNA-binding transcription factor family protein; Transcriptional regulator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE) (377 aa)
     
 
  0.568
AT5G58900
Similarity to Myb-related transcription factor; Homeodomain-like transcriptional regulator; Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Expressed in 20 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609), SANT, eukarya (InterPro-IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro-IPR006447), SANT, DNA-binding (InterPro-IPR001005), Homeodomain-like (InterPro-IPR [...] (288 aa)
     
   
  0.532
GRP5
Encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers (174 aa)
           
  0.530
AT5G06800
Myb-like HTH transcriptional regulator family protein; Contains the following InterPro domains- Homeodomain-like (InterPro-IPR009057), Myb, DNA-binding (InterPro-IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro-IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro-IPR006447), Homeodomain-related (InterPro-IPR012287); BEST Arabidopsis thaliana protein match is- Homeodomain-like superfamily protein (TAIR-AT3G04450.1); Has 1663 Blast hits to 1650 proteins in 68 species- Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 1631; Viruses - 0; Other [...] (375 aa)
           
  0.528
TAFII15
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Involved in osmotic stress adaptation during the germination stage and in gene expression related to meristem activity and leaf development; Belongs to the TAF10 family (134 aa)
       
 
  0.527
SIZ1
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain; E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses. Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress- induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facili [...] (885 aa)
     
 
  0.513
SKIP
SNW/SKI-interacting protein; Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. Associates with the pre-mRNA of PRR7, PRR9, ELF3 and GI, and is necessary for the regulation of their alternative splicing and mRNA maturation. Probably involved in splice site recognition; Belongs to the SNW family (613 aa)
     
 
  0.509
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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