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AT1G09470 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09470" - Nuclear envelope-associated protein 3 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G09470Nuclear envelope-associated protein 3; Unknown protein; Its function is described as molecular_function unknown; Expressed in cotyledon; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G26770.1); Has 55019 Blast hits to 30094 proteins in 2088 species- Archae - 730; Bacteria - 6553; Metazoa - 28961; Fungi - 4800; Plants - 2559; Viruses - 111; Other Eukaryotes - 11305 (source- NCBI BLink) (336 aa)    
Predicted Functional Partners:
AT4G31430
Protein KAKU4; Required for nucleus structure organization (e.g. size and shape) (574 aa)
           
  0.864
AT2G41980
Protein with RING/U-box and TRAF-like domains; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates (Probable). Mediates the proteasomal-dependent degradation of ATG6, a component of the autophagosome complex. Requires TRAF1A/MUSE14 and TRAF1B/MUSE13 to target ATG6 for ubiquit [...] (305 aa)
           
  0.839
LINC4
LITTLE NUCLEI4 (LINC4); Expressed in 23 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR-AT5G65780.2); Has 215167 Blast hits to 102614 proteins in 3709 species- Archae - 2940; Bacteria - 43360; Metazoa - 90724; Fungi - 17442; Plants - 11239; Viruses - 934; Other Eukaryotes - 48528 (source- NCBI BLink) (1042 aa)
           
  0.830
ATBCAT-5
Branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5); Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity). Required for nucleus structure organization (e.g. size and shape). Involved in the maintenance of interphase chromocenter integrity and organization (1018 aa)
           
  0.740
ARP7
Actin-related protein 7; Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression; Belongs to the actin family. Plant ARP7 subfamily (363 aa)
           
  0.699
NUP1
Nuclear pore complex protein NUP1; Nucleoporin required for nuclear mRNA export. Functions as an adapter and/or regulator molecule in the periphery of the nuclear pore complex (NPC). May interact with importin proteins and mediate active nucleocytoplasmic transport through the NPC. Involved in regulation of nuclear morphology (1309 aa)
           
  0.699
LINC1
Protein CROWDED NUCLEI 1; Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity). Required for nucleus structure organization (e.g. size and shape) (1132 aa)
           
  0.699
AT1G71360
SUN domain-containing protein 4; Encodes a member of the mid-SUN subfamily of SUN-domain proteins that is localized to both the nuclear envelope and the ER. It is involved in early seed development and nuclear morphology. [TAIR] (596 aa)
           
  0.698
AT5G01980
Uncharacterized protein T7H20_30; RING/U-box superfamily protein; Its function is described as zinc ion binding; Expressed in 22 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT5G08139.1); Has 7827 Blast hits to 7813 proteins in 270 species- Archae - 0; Bacteria - 9; Metazoa - 2445; Fungi - 565; Plants - 3731; Viruses - 72; Other Eukaryotes - 1005 (source- NCBI BLink) (493 aa)
           
  0.662
RPH1
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae (201 aa)
           
  0.662
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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