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STRINGSTRING
AT1G09600 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09600" - Probable serine/threonine-protein kinase At1g09600 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G09600Probable serine/threonine-protein kinase At1g09600; Protein kinase superfamily protein; Its function is described as protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; Involved in protein amino acid phosphorylation, N-terminal protein myristoylation; Located in cellular_component unknown; Expressed in 18 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- Protein kinase, ATP binding site (InterPro-IPR017441), Protein kinase, catalytic domain (InterPro-IPR000719), Serine/threonine-protein kinase doma [...] (714 aa)    
Predicted Functional Partners:
AT5G45190
Cyclin family protein; Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV) (590 aa)
     
 
  0.644
CYCT1;4
Cyclin family protein; Encodes a cyclin T partner CYCT1;4. Plays important roles in infection with Cauliflower mosaic virus (CaMV); Belongs to the cyclin family. Cyclin T subfamily (541 aa)
     
 
  0.644
CYCT1;2
Cyclin family protein; CYCT1;2; Contains the following InterPro domains- Cyclin-like (InterPro-IPR011028), Cyclin-related (InterPro-IPR013763), Transcription regulator cyclin (InterPro-IPR015429), Cyclin, N-terminal (InterPro-IPR006671), Cyclin (InterPro-IPR006670); BEST Arabidopsis thaliana protein match is- Cyclin family protein (TAIR-AT5G45190.1); Has 2418 Blast hits to 2418 proteins in 249 species- Archae - 4; Bacteria - 2; Metazoa - 1390; Fungi - 391; Plants - 394; Viruses - 0; Other Eukaryotes - 237 (source- NCBI BLink) (460 aa)
     
 
  0.644
CYCT1;1
Putative cyclin-T1-1; Cyclin T1;1 (CYCT1;1); Contains the following InterPro domains- Cyclin-like (InterPro-IPR011028), Transcription regulator cyclin (InterPro-IPR015429), Cyclin-related (InterPro-IPR013763), Cyclin, N-terminal (InterPro-IPR006671), Cyclin (InterPro-IPR006670); BEST Arabidopsis thaliana protein match is- Cyclin family protein (TAIR-AT5G45190.1); Has 1935 Blast hits to 1935 proteins in 244 species- Archae - 0; Bacteria - 0; Metazoa - 1012; Fungi - 386; Plants - 395; Viruses - 0; Other Eukaryotes - 142 (source- NCBI BLink) (247 aa)
     
 
  0.644
CYCT1;3
Cyclin T 1;3 (CYCT1;3); Contains the following InterPro domains- Cyclin-like (InterPro-IPR011028), Transcription regulator cyclin (InterPro-IPR015429), Cyclin-related (InterPro-IPR013763), Cyclin, N-terminal (InterPro-IPR006671), Cyclin (InterPro-IPR006670); BEST Arabidopsis thaliana protein match is- Cyclin family protein (TAIR-AT5G45190.1); Has 1569 Blast hits to 1569 proteins in 224 species- Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 342; Plants - 269; Viruses - 0; Other Eukaryotes - 111 (source- NCBI BLink) (317 aa)
     
 
  0.644
KTF1
Kow domain-containing transcription factor 1; Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). Functions as an adapter protein that binds scaffold transcripts generated by polymerase V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex. Promotes the expression of 24-nt RNAs. Required for the initial establishment of DNA methylation. Together with AGO4, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci (1493 aa)
     
 
  0.558
GTA2
Putative transcription elongation factor SPT5 homolog 1; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (1041 aa)
     
 
  0.558
AT2G34210
Putative transcription elongation factor SPT5 homolog 2; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (989 aa)
     
 
  0.558
CYCH;1
Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases (336 aa)
     
 
  0.516
NRPD1B
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase V involved in RNA-directed DNA methylation-dependent (RdDM) silencing of endogenous repeated sequences, including transposable elements. Also required for full erasure of methylation when the RNA trigger is withdrawn. Seems also involved in the synthesis of short-interfering RNAs (siRNA). Essential component of a self- reinforcing loop coupling de novo DNA methylatio [...] (1976 aa)
     
 
  0.508
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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