STRINGSTRING
AT1G09660 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09660" - RNA-binding KH domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G09660RNA-binding KH domain-containing protein (298 aa)    
Predicted Functional Partners:
AT3G12130
Zinc finger CCCH domain-containing protein 36 (248 aa)
     
   
  0.924
AT5G08420
RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
   
  0.924
UGT76D1
UDP-glucosyl transferase 76D1; Possesses low quercetin 7-O-glucosyltransferase activity in vitro (452 aa)
           
  0.923
AT1G10580
pre-mRNA-processing factor 17 (573 aa)
     
 
  0.871
AT5G06770
Zinc finger CCCH domain-containing protein 52 (240 aa)
           
  0.863
CID12
CTC-interacting domain 12; Binds nucleotic acids in vitro (336 aa)
     
 
  0.858
UBA2A
UBP1-associated protein 2A; Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3’-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus. However, unlike UBP1, UBA2A does not stimulate pre-mRNA splicing (478 aa)
     
 
  0.829
RS41
Arginine/serine-rich splicing factor 41; Required for constitutive and alternative pre-mRNA splicing (357 aa)
     
 
  0.828
AT2G43370
RNA-binding (RRM/RBD/RNP motifs) family protein; May facilitate 5’ splice site recognition in the minor spliceosome. May be involved in interactions with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron (333 aa)
     
 
  0.820
RS31
Arginine/serine-rich splicing factor 31; Required for constitutive and alternative pre-mRNA splicing (264 aa)
     
 
  0.807
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (17%) [HD]