STRINGSTRING
RPF1 protein (Arabidopsis thaliana) - STRING interaction network
"RPF1" - RNA processing factor 1 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
RPF1RNA processing factor 1 (735 aa)    
Predicted Functional Partners:
AT1G12160
Flavin-binding monooxygenase family protein; Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates (468 aa)
           
  0.910
IMP4
Ribosomal RNA processing Brix domain protein (294 aa)
     
   
  0.868
AT4G16960
TIR-NBS-LRR class disease resistance protein (1041 aa)
           
  0.709
CCMH
Cytochrome c biogenesis protein; Plays a central role in mitochondrial cytochrome c maturation. Probable component of a heme lyase complex involved in the reduction of apocytochrome c (PubMed-16236729). Forms a complex with CCMF proteins (CCMFC, CCMFN1 and CCMFN2) that performs the assembly of heme with c-type apocytochromes in mitochondria (PubMed-18644794) (159 aa)
           
  0.556
NOP56
NOP56-like protein (522 aa)
     
   
  0.457
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.449
AT1G48510
Surfeit locus 1 cytochrome c oxidase biogenesis protein; May be involved in the biogenesis of the COX complex (384 aa)
     
   
  0.449
SUN1
SAD1/UNC-84 domain protein 1; Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (PubMed-24667841). Required for the maintenance and/or formation of polarized nuclear shape in root hairs (PubMed-21294795). Modulates the anchoring and mobility of WIP proteins and RANGAP1 in the nuclear envelope (NE) (PubMed-22270916) (471 aa)
           
  0.449
K9E15.1
RESISTANT TO P. SYRINGAE 4; Disease resistance (R) protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The combined presence of both regular and alternative RPS4 transcripts with truncated open reading frames (ORFs) is necessary for function (PubMed-17951452). RPS4 function [...] (1217 aa)
           
  0.444
AT1G02410
Cytochrome c oxidase assembly protein CtaG / Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I (287 aa)
       
 
  0.433
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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