• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G13040 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G13040" - Pentatricopeptide repeat-containing protein At1g13040, mitochondrial in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G13040Pentatricopeptide repeat-containing protein At1g13040, mitochondrial; Pentatricopeptide repeat (PPR-like) superfamily protein; Involved in biological_process unknown; Located in plasma membrane; Expressed in cultured cell; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT1G62910.1); Has 55149 Blast hits to 14680 proteins in 295 species- Archae - 3; Bacteria - 38; Metazoa - 581; Fungi - 873; Plants - 52114; Viruses - 0; Other Eukaryotes - 1540 (so [...] (517 aa)    
Predicted Functional Partners:
AT1G13050
Proline-rich receptor-like kinase; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species- Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source- NCBI BLink) (317 aa)
     
   
  0.967
EIF4B2
Eukaryotic translation initiation factor 4B2; Promotes the eIF4F and eIF4A RNA-dependent ATP- hydrolysis activity with different efficiency depending on mRNAs, thus providing mRNA discrimination during initiation of translation (549 aa)
           
  0.892
PBE1
Proteasome subunit beta type-5-A; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity; Belongs to the peptidase T1B family (298 aa)
     
   
  0.837
AT1G12800
Nucleic acid-binding, OB-fold-like protein; Its function is described as RNA binding; Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nucleic acid-binding, OB-fold-like (InterPro-IPR016027), Nucleic acid-binding, OB-fold (InterPro-IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro-IPR003029); BEST Arabidopsis thaliana protein match is- Nucleic acid-binding proteins superfamily (TAIR-AT3G23700.1); Has 17110 Blast hits to 8844 proteins in 2496 species- Archae - 8; Bacteria - 12066; Metazoa - [...] (767 aa)
     
   
  0.790
AT1G12760
Zinc finger, C3HC4 type (RING finger) family protein; Mediates E2-dependent protein ubiquitination in vitro (408 aa)
           
  0.784
AT1G63310
Uncharacterized protein At1g63310/F9N12_7; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (154 aa)
           
  0.782
AT1G13030
Sphere organelles protein-related; Probable component of nuclear coiled bodies, also known as Cajal bodies or CBs, which are involved in the modification and assembly of nucleoplasmic snRNPs (Probable). Required for CBs formation. Binds snRNAs and non-specific artificial RNA via the N-terminal part of the NOD domain and via the NLS2 region (212-282) of the IDD domain. The two sites are able to function independently and provide effective RNA-binding in a non-cooperative manner (608 aa)
     
   
  0.736
AT1G12790
Protein PARTING DANCERS; Required for chromosome segregation during meiosis. During diakinesis and prometaphase I, essential for the formation of class I meiotic crossovers and homologous recombination; Belongs to the ERCC1/RAD10/SWI10 family (250 aa)
           
  0.532
PGGT-I
Geranylgeranyl transferase type-1 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2. Involved in the geranylgeranylation of RABA2A. In vitro, can prenylate PGGTI targets with the C-terminal sequence Cys- aliphatic-aliphatic-X (CaaX) with leucine in the terminal position. Substrates with the C-terminal sequence -CSIL such as ARAC11/ROP1 or GG2/AGG2 are prenylated independently of REP and when the beta subunit [...] (375 aa)
           
  0.463
APG3
Peptide chain release factor APG3, chloroplastic; May direct the termination of translation in response to the peptide chain termination codon UAG. Required for normal chloroplast development and plays essential roles in the termination of translation in plastids (422 aa)
           
  0.430
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]