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AT1G16480 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16480" - PPR repeat domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G16480PPR repeat domain-containing protein (937 aa)    
Predicted Functional Partners:
AT3G02490
Pentatricopeptide repeat-containing protein (665 aa)
     
   
  0.623
AT4G02820
Pentatricopeptide repeat-containing protein (532 aa)
     
   
  0.617
AT5G06810
Mitochondrial transcription termination factor family protein (1141 aa)
     
 
  0.611
AT1G02370
Pentatricopeptide repeat-containing protein (537 aa)
     
   
  0.600
AT1G62010
Mitochondrial transcription termination factor family protein (415 aa)
     
 
  0.592
AT4G40000
S-adenosyl-L-methionine-dependent methyltransferase-like protein (783 aa)
     
   
  0.588
SHOT1
Suppressor of hot1-4 1; Transcription termination factor involved in the regulation of mitochondrial-encoded gene expression. Essential for normal plant growth and development (558 aa)
     
 
  0.587
OSB4
Protein OSB4; Binds single-stranded DNA (360 aa)
     
   
  0.578
AT1G61990
Mitochondrial transcription termination factor family protein (414 aa)
     
 
  0.571
AT2G26790
Pentatricopeptide repeat-containing protein (799 aa)
     
   
  0.571
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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