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AT1G16860 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16860" - Ubiquitin-specific protease family C19-related protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G16860Ubiquitin-specific protease family C19-related protein (474 aa)    
Predicted Functional Partners:
AT4G16940
TIR-NBS-LRR class disease resistance protein (1147 aa)
           
  0.955
AT4G16920
TIR-NBS-LRR class disease resistance protein (1304 aa)
           
  0.955
AT4G16960
TIR-NBS-LRR class disease resistance protein (1041 aa)
           
  0.879
AT4G16900
TIR-NBS-LRR class disease resistance protein (1040 aa)
           
  0.865
RLP42
Receptor like protein 42 (890 aa)
           
  0.808
RLP41
Receptor like protein 41 (881 aa)
           
  0.673
GTR1
GLUCOSINOLATE TRANSPORTER-1; High-affinity, proton-dependent glucosinolate-specific transporter. Involved in the distribution of glucosinolates within the leaf, including import into the glucosinolate-rich S-cells located adjacent to the phloem. Involved in bidirectional long- distance transport of aliphatic but not indole glucosinolates. May be involved in removal of glucosinolates from the xylem in roots (636 aa)
           
  0.631
CPuORF55
Conserved peptide upstream open reading frame 55 (25 aa)
     
        0.438
RPP5
RECOGNITION OF PERONOSPORA PARASITICA 5; TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis isolate Noco2 (downy mildew disease) (PubMed-9212464). Confers resistance to H.arabidopsis isolates Emoy2, Emwa1 and Noco2 (PubMed-11846877) (1449 aa)
           
  0.424
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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