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UBP1B protein (Arabidopsis thaliana) - STRING interaction network
"UBP1B" - Oligouridylate-binding protein 1B in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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UBP1BOligouridylate-binding protein 1B; Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. Functions to facilitate the nuclear maturation of plant pre-mRNAs (By similarity) (419 aa)    
Predicted Functional Partners:
AT5G60980
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in transport, nucleocytoplasmic transport; Located in intracellular; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nuclear transport factor 2 (InterPro-IPR002075), RNA recognition motif, RNP-1 (InterPro-IPR000504), Nuclear transport factor 2, Eukaryote (InterPro-IPR018222), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST A [...] (460 aa)
     
 
  0.857
AT4G17610
tRNA/rRNA methyltransferase (SpoU) family protein; Its function is described as RNA binding, RNA methyltransferase activity; Involved in RNA processing; Located in endomembrane system; Expressed in 17 plant structures; Expressed during 9 growth stages; Contains the following InterPro domains- tRNA/rRNA methyltransferase, SpoU (InterPro-IPR001537); Has 6630 Blast hits to 6614 proteins in 1865 species- Archae - 7; Bacteria - 4787; Metazoa - 103; Fungi - 50; Plants - 109; Viruses - 0; Other Eukaryotes - 1574 (source- NCBI BLink) (1850 aa)
           
  0.837
AT1G72416
Chaperone DnaJ-domain superfamily protein; Its function is described as heat shock protein binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609), Heat shock protein DnaJ, N-terminal (InterPro-IPR001623), Heat shock protein DnaJ, conserved site (InterPro-IPR018253); BEST Arabidopsis thaliana protein match is- Chaperone DnaJ-domain superfamily protein (TAIR-AT3G14200.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bac [...] (201 aa)
       
 
  0.780
AT3G24830
Ribosomal protein L13 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L13 (InterPro-IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro-IPR005755); BEST Arabidopsis thaliana protein match is- Ribosomal protein L13 family protein (TAIR-AT3G07110.1); Has 2057 Blast hits to 2057 proteins in 651 [...] (206 aa)
     
 
  0.753
UBP1
Ubiquitin carboxyl-terminal hydrolase 1; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins. Is involved in resistance to the arginine analog canavanine (CAN) (1083 aa)
       
 
  0.733
SAP10
Zinc finger A20 and AN1 domain-containing stress-associated protein 10; May be involved in environmental stress response (130 aa)
     
 
  0.713
APS4
Pseudouridine synthase/archaeosine transglycosylase-like family protein; Sulfate adenylyltransferase, ATP sulfurylase (469 aa)
     
   
  0.672
AT4G17390
Ribosomal protein L23/L15e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, cytosolic large ribosomal subunit, nucleolus, membrane; Expressed in 25 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Ribosomal protein L15e (InterPro-IPR000439), Ribosomal protein L23/L15e, core (InterPro-IPR012678), Ribosomal protein L15e, conserved site (InterPro-IPR020925); BEST Arabidopsis thaliana protein match is- Ribosomal protein L23/L15e family protein (TAIR-AT4G16720.1); Has 1 [...] (204 aa)
     
 
  0.659
AT3G13310
Chaperone DnaJ-domain superfamily protein; Its function is described as unfolded protein binding, heat shock protein binding; Involved in protein folding; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609), Heat shock protein DnaJ, N-terminal (InterPro-IPR001623), Heat shock protein DnaJ (InterPro-IPR003095), Heat shock protein DnaJ, conserved site (InterPro-IPR018253); BEST Arabidopsis thaliana protein match is- Chaperone DnaJ-domain superfamily protein [...] (157 aa)
       
 
  0.631
CSLC12
Probable xyloglucan glycosyltransferase 12; Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose. Seems to work simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a noncellulosic polysaccharides of plant cell wall and consists of a glucan backbone substituted by xylose, galactose and fucose (By similarity) (699 aa)
       
 
  0.627
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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