• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
DA1 protein (Arabidopsis thaliana) - STRING interaction network
"DA1" - Protein DA1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA1Protein DA1; Ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. May act maternally to control seed mass (532 aa)    
Predicted Functional Partners:
AT1G02080
Transcription regulators; Its function is described as transcription regulator activity; Located in membrane; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- CCR4-Not complex component, Not1 (InterPro-IPR007196); Has 1434 Blast hits to 680 proteins in 246 species- Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source- NCBI BLink) (2431 aa)
     
        0.723
CSD3
Copper/zinc superoxide dismutase 3; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (164 aa)
           
  0.667
AT3G04480
Endoribonucleases; Its function is described as endoribonuclease activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein of unknown function DUF71, ATP-binding domain (InterPro-IPR002761), Rossmann-like alpha/beta/alpha sandwich fold (InterPro-IPR014729), Endoribonuclease L-PSP (InterPro-IPR006175), Endoribonuclease L-PSP/chorismate mutase-like (InterPro-IPR013813); Has 2752 Blast hits to 2664 proteins in 980 species- Archae - 283; Bacteria - 1 [...] (718 aa)
       
 
  0.649
SAP
Transducin/WD40 repeat-like superfamily protein; Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule (446 aa)
       
 
  0.644
AT2G35920
DExH-box ATP-dependent RNA helicase DExH1; RNA helicase family protein; Its function is described as helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Helicase-associated domain (InterPro-IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), Domain of unknown function DUF1605 (InterPro-IPR011709), DNA/RNA helicase, ATP-dependent, DEAH- [...] (995 aa)
     
   
  0.621
AT1G58060
RNA helicase family protein; Its function is described as helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; Involved in biological_process unknown; Located in chloroplast; Contains the following InterPro domains- Helicase-associated domain (InterPro-IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), Domain of unknown function DUF1605 (InterPro-IPR011709), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-terminal (InterPro-IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro-IPR01 [...] (1459 aa)
     
   
  0.621
AT3G62310
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; May be involved in pre-mRNA splicing (726 aa)
     
   
  0.621
AT2G47250
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3; May be involved in pre-mRNA splicing (729 aa)
     
   
  0.621
SAPX
L-ascorbate peroxidase S, chloroplastic/mitochondrial; Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis- three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms (372 aa)
           
  0.614
AT3G15090
GroES-like zinc-binding alcohol dehydrogenase family protein; Its function is described as oxidoreductase activity, zinc ion binding; Involved in oxidation reduction; Located in mitochondrion; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- GroES-like (InterPro-IPR011032), Alcohol dehydrogenase GroES-like (InterPro-IPR013154), Alcohol dehydrogenase, C-terminal (InterPro-IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro-IPR002085); BEST Arabidopsis thaliana protein match is- Oxidoreductase, zinc-binding [...] (366 aa)
     
   
  0.599
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]