STRINGSTRING
AT1G20600 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20600" - AP2/B3 domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G20600AP2/B3 domain-containing protein (237 aa)    
Predicted Functional Partners:
AT4G31640
B3 domain-containing protein REM5 (352 aa)
           
  0.861
AT2G24680
B3 domain-containing protein REM12 (471 aa)
           
  0.861
AT1G16640
AP2/B3-like transcriptional factor family protein (134 aa)
           
  0.739
AT2G24645
Transcriptional factor B3 family protein (490 aa)
           
  0.704
RTV1
Related to vernalization1 1; Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes (226 aa)
           
  0.678
AT4G31620
B3 domain-containing protein REM3 (492 aa)
           
  0.670
NGA2
NGATHA2; Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4 (299 aa)
           
  0.634
NGA1
NGATHA1; Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4 (310 aa)
           
  0.556
SNRNP-G
Small nuclear ribonucleoprotein; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (80 aa)
         
    0.540
SmD3
snRNP core protein SMD3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a minor role in the splicing of cellular pre-mRNAs (PubMed-21421416) (128 aa)
         
    0.540
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (20%) [HD]