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AT1G20940 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20940" - Putative F-box/kelch-repeat protein At1g20940 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G20940Putative F-box/kelch-repeat protein At1g20940; F-box family protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364), F-box associated interaction domain (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- SWI-SNF-related chromatin binding protein (TAIR-AT1G20240.1); Has 79 Blast hits to 74 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (414 aa)    
Predicted Functional Partners:
AT4G22430
Putative F-box/kelch-repeat protein At4g22430; F-box family protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364); BEST Arabidopsis thaliana protein match is- Galactose oxidase/kelch repeat superfamily protein (TAIR-AT3G26010.1); Has 117 Blast hits to 117 proteins in 7 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (427 aa)
     
        0.422
AT1G43666
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Its function is described as molecular_function unknown; Involved in lipid transport; Located in endomembrane system; Contains the following InterPro domains- Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro-IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro-IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro-IPR013770); BEST Arabidopsis thaliana protein match is- Bifunctional inhibitor/lipid [...] (96 aa)
     
        0.422
AT1G26797
Plant self-incompatibility protein S1 family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT1G26798.1); Has 216 Blast hits to 204 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (140 aa)
     
        0.420
AT3G45248
Encodes a ECA1 gametogenesis related family protein (114 aa)
     
        0.418
AT5G05030
NEP-interacting protein, putative (DUF239); Protein of Unknown Function (DUF239); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in flower, seed; Expressed during petal differentiation and expansion stage, E expanded cotyledon stage; Contains the following InterPro domains- Protein of unknown function DUF239, plant (InterPro-IPR004314); BEST Arabidopsis thaliana protein match is- Protein of Unknown Function (DUF239) (TAIR-AT5G11660.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae [...] (363 aa)
     
        0.418
AT1G43667
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Its function is described as molecular_function unknown; Involved in lipid transport; Located in endomembrane system; Contains the following InterPro domains- Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro-IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro-IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro-IPR013770); BEST Arabidopsis thaliana protein match is- Bifunctional inhibitor/lipid [...] (98 aa)
     
        0.414
AT1G27250
Paired amphipathic helix (PAH2) superfamily protein; Its function is described as molecular_function unknown; Involved in regulation of transcription, DNA-dependent; Located in nucleus; Contains the following InterPro domains- Paired amphipathic helix (InterPro-IPR003822); BEST Arabidopsis thaliana protein match is- paired amphipathic helix repeat-containing protein (TAIR-AT1G27220.1); Has 603 Blast hits to 572 proteins in 159 species- Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 151; Plants - 225; Viruses - 0; Other Eukaryotes - 29 (source- NCBI BLink) (137 aa)
     
        0.405
AT1G26796
Plant self-incompatibility protein S1 family; Located in endomembrane system; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT1G26795.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (151 aa)
     
        0.405
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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