• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G22490 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G22490" - Basic helix-loop-helix in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G22490Basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Located in nucleus; Expressed in 17 plant structures; Expressed during 8 growth stages; Contains the following InterPro domains- Helix-loop-helix DNA-binding domain (InterPro-IPR001092), Helix-loop-helix DNA-binding (InterPro-IPR011598); BEST Arabidopsis thaliana protein match is- basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR-AT1G72210.1); Has 1544 Blast hits t [...] (304 aa)    
Predicted Functional Partners:
AT5G12100
Pentatricopeptide (PPR) repeat-containing protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT5G65560.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (816 aa)
           
  0.951
AT3G24065
Plant self-incompatibility protein S1 family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT3G24068.1); Has 21 Blast hits to 21 proteins in 4 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (135 aa)
           
  0.951
AT3G05741
Plant invertase/pectin methylesterase inhibitor superfamily protein; Its function is described as enzyme inhibitor activity, pectinesterase activity; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Pectinesterase inhibitor (InterPro-IPR006501); BEST Arabidopsis thaliana protein match is- invertase/pectin methylesterase inhibitor family protein (TAIR-AT3G17230.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - [...] (190 aa)
           
  0.951
AT1G51230
Plant self-incompatibility protein S1 family; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT1G51240.1); Has 52 Blast hits to 52 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (125 aa)
           
  0.951
AT1G09360
Plant invertase/pectin methylesterase inhibitor superfamily protein; Its function is described as enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- Pectinesterase inhibitor (InterPro-IPR006501); BEST Arabidopsis thaliana protein match is- Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR-AT1G09370.1); Has 29 Blast hits to 29 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29 [...] (188 aa)
           
  0.951
PUP19
Putative purine permease 19; Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane (393 aa)
           
  0.903
AT1G17345
SAUR-like auxin-responsive protein family ; Contains the following InterPro domains- Auxin responsive SAUR protein (InterPro-IPR003676); BEST Arabidopsis thaliana protein match is- SAUR-like auxin-responsive protein family (TAIR-AT1G72430.1); Has 128 Blast hits to 128 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (131 aa)
           
  0.890
AT3G15490
Regulator of Vps4 activity in the MVB pathway protein; Contains the following InterPro domains- Protein of unknown function DUF292, eukaryotic (InterPro-IPR005061); BEST Arabidopsis thaliana protein match is- Regulator of Vps4 activity in the MVB pathway protein (TAIR-AT2G14830.1); Has 332 Blast hits to 332 proteins in 49 species- Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 35; Plants - 273; Viruses - 0; Other Eukaryotes - 15 (source- NCBI BLink) (211 aa)
           
  0.867
AT1G52000
Mannose-binding lectin superfamily protein; Its function is described as molecular_function unknown; Involved in response to salt stress; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Mannose-binding lectin (InterPro-IPR001229); BEST Arabidopsis thaliana protein match is- myrosinase-binding protein 1 (TAIR-AT1G52040.1); Has 167771 Blast hits to 59831 proteins in 3132 species- Archae - 576; Bacteria - 64709; Metazoa - 36025; Fungi - 10183; Plants - 11804; Viruses - 2110; Other Eukaryot [...] (730 aa)
           
  0.838
SCPL51
Serine carboxypeptidase-like 51; Probable carboxypeptidase; Belongs to the peptidase S10 family (461 aa)
     
   
  0.692
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (10%) [HD]