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AT1G22950 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G22950" - Uncharacterized PKHD-type hydroxylase in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G22950Uncharacterized PKHD-type hydroxylase (397 aa)    
Predicted Functional Partners:
AT1G57720
Elongation factor EF-1 gamma subunit; Probably plays a role in anchoring the complex to other cellular components (413 aa)
     
      0.770
AT1G09640
Elongation factor EF-1 gamma subunit; Probably plays a role in anchoring the complex to other cellular components (414 aa)
     
      0.757
EMB2729
EMBRYO DEFECTIVE 2729; Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Essential during embryogenesis (899 aa)
     
      0.627
SBE2.2
Starch branching enzyme 2.2; Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position (805 aa)
       
      0.603
SBE2.1
Starch branching enzyme 2.1; Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position (858 aa)
       
      0.603
LIG1
DNA ligase 1; Essential protein. DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Involved in repair of both single strand breaks (SSBs) and double strand breaks (DSBs). Required in the endosperm for embryogenesis, probably to repair DNA-breaks generated by DME (790 aa)
     
        0.443
AT1G13030
Coilin; Probable component of nuclear coiled bodies, also known as Cajal bodies or CBs, which are involved in the modification and assembly of nucleoplasmic snRNPs (Probable). Required for CBs formation (PubMed-16624863). Binds snRNAs and non-specific artificial RNA via the N-terminal part of the NOD domain and via the NLS2 region (212-282) of the IDD domain (PubMed-23320094). The two sites are able to function independently and provide effective RNA-binding in a non-cooperative manner (PubMed-23320094) (608 aa)
     
        0.434
AT5G39960
GTP-binding protein (621 aa)
     
        0.430
AT4G10620
GTPase YqeH-like protein (597 aa)
     
        0.429
AT3G53940
Mitochondrial substrate carrier family protein (365 aa)
     
        0.429
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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