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ARL1 protein (Arabidopsis thaliana) - STRING interaction network
"ARL1" - Encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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ARL1Encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined (436 aa)    
Predicted Functional Partners:
AT4G16660
Heat shock protein 70 (Hsp 70) family protein; Its function is described as ATP binding; Located in plasma membrane, chloroplast; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Heat shock protein 70, conserved site (InterPro-IPR018181), Heat shock protein Hsp70 (InterPro-IPR001023), Heat shock protein 70 (InterPro-IPR013126); BEST Arabidopsis thaliana protein match is- heat shock protein 70 (Hsp 70) family protein (TAIR-AT1G11660.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazo [...] (867 aa)
   
 
  0.820
SHD
Chaperone protein htpG family protein; Encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a rol [...] (823 aa)
     
 
  0.797
AT5G06220
LETM1-like protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- LETM1-like (InterPro-IPR011685); BEST Arabidopsis thaliana protein match is- LETM1-like protein (TAIR-AT3G11560.4) (909 aa)
           
  0.732
AT3G11560
Uncharacterized protein At3g11570; LETM1-like protein; Located in chloroplast, chloroplast envelope; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- LETM1-like (InterPro-IPR011685); BEST Arabidopsis thaliana protein match is- LETM1-like protein (TAIR-AT5G06220.2); Has 461 Blast hits to 445 proteins in 157 species- Archae - 0; Bacteria - 8; Metazoa - 136; Fungi - 162; Plants - 104; Viruses - 0; Other Eukaryotes - 51 (source- NCBI BLink) (872 aa)
           
  0.732
BIP1
Mediator of RNA polymerase II transcription subunit 37a; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre- initiation complex with RNA polymerase II and the genera [...] (669 aa)
 
 
  0.664
BIP2
Mediator of RNA polymerase II transcription subunit 37f; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general [...] (668 aa)
 
 
  0.663
BIP3
Probable mediator of RNA polymerase II transcription subunit 37b; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional pre- initiation complex with RNA polymerase II and t [...] (675 aa)
 
 
  0.662
AT2G41060
RNA-binding (RRM/RBD/RNP motifs) family protein; Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3’-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity) (451 aa)
       
 
  0.660
ATGRIP
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization (788 aa)
       
      0.655
LETM2
LETM1-like protein; Its function is described as calcium ion binding; Involved in biological_process unknown; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- EF-HAND 2 (InterPro-IPR018249), EF-hand-like domain (InterPro-IPR011992), LETM1-like (InterPro-IPR011685); BEST Arabidopsis thaliana protein match is- LETM1-like protein (TAIR-AT3G59820.1); Has 7253 Blast hits to 6279 proteins in 764 species- Archae - 76; Bacteria - 1084; Metazoa - 3311; Fungi - 589; Plants - 471; Viruses - 24; Other Eukaryotes - 1698 (source- NCBI BLink) (736 aa)
           
  0.642
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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