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AT1G24560 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G24560" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G24560Uncharacterized protein (678 aa)    
Predicted Functional Partners:
AT5G56900
Zinc finger CCCH domain-containing protein 64 (596 aa)
           
  0.955
AT2G05920
Subtilase-like protein (754 aa)
           
  0.955
AT5G56920
Cystatin-related protein (227 aa)
           
  0.868
GGPS4
Geranylgeranyl pyrophosphate synthase 3; Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate (372 aa)
           
  0.807
RLP43
Receptor like protein 43 (711 aa)
           
  0.670
CYP71B4
Cytochrome P450 71B4 (504 aa)
           
  0.670
TEL1
Terminal EAR1-like 1 (615 aa)
           
  0.670
PIP2E
Putative aquaporin PIP2-6; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes (289 aa)
           
  0.600
GH3.1
Putative indole-3-acetic acid-amido synthetase GH3.1; Catalyzes the synthesis of indole-3-acetic acid (IAA)- amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin (590 aa)
           
  0.554
LRP1
LATERAL ROOT PRIMORDIUM 1; Transcription activator that binds DNA on 5’-ACTCTAC-3’ and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI- related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical mer [...] (407 aa)
           
  0.491
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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