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RNS3 protein (Arabidopsis thaliana) - STRING interaction network
"RNS3" - Ribonuclease 3 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
RNS3Ribonuclease 3; May remobilize phosphate, particularly when cells senesce or when phosphate becomes limiting (222 aa)    
Predicted Functional Partners:
BFN1
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops) (305 aa)
     
   
  0.942
MC9
Metacaspase-9; Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Required for proteolytic processing of GRI; Belongs to the peptidase C14B family (325 aa)
     
   
  0.874
scpl48
Serine carboxypeptidase-like 48; Probable carboxypeptidase (510 aa)
     
   
  0.799
BBD1
Bifunctional nuclease in basal defense response 1; Bifunctional nuclease with both RNase and DNase activities. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen; Belongs to the bifunctional nuclease family (325 aa)
           
  0.790
XCP1
Xylem cysteine peptidase 1; Cysteine protease involved in xylem tracheary element (TE) autolysis during xylogenesis in roots. Participates in micro autolysis within the intact central vacuole before mega autolysis is initiated by tonoplast implosion (355 aa)
     
   
  0.749
AT1G07210
Uncharacterized protein At1g07210; Ribosomal protein S18; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, intracellular; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein S18 (InterPro-IPR001648); Has 5527 Blast hits to 5527 proteins in 2078 species- Archae - 0; Bacteria - 4261; Metazoa - 44; Fungi - 19; Plants - 203; Viruses - 0; Other Eukaryotes - 1000 (source- NCBI BLink) (261 aa)
           
  0.710
VND1
Vascular related NAC-domain protein 1; Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5’- (T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3’, in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (365 aa)
           
  0.642
AT5G15390
tRNA/rRNA methyltransferase (SpoU) family protein; Its function is described as RNA binding, RNA methyltransferase activity; Involved in RNA processing; Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- tRNA/rRNA methyltransferase, SpoU (InterPro-IPR001537); Has 11780 Blast hits to 11778 proteins in 2508 species- Archae - 10; Bacteria - 9274; Metazoa - 151; Fungi - 61; Plants - 151; Viruses - 0; Other Eukaryotes - 2133 (source- NCBI BLink) (350 aa)
           
  0.629
AT4G15520
tRNA/rRNA methyltransferase (SpoU) family protein; Its function is described as RNA binding, RNA methyltransferase activity; Involved in RNA processing; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- tRNA/rRNA methyltransferase, SpoU (InterPro-IPR001537); Has 7549 Blast hits to 7548 proteins in 2062 species- Archae - 19; Bacteria - 6000; Metazoa - 86; Fungi - 2; Plants - 92; Viruses - 0; Other Eukaryotes - 1350 (source- NCBI BLink) (222 aa)
           
  0.629
AT2G19870
tRNA/rRNA methyltransferase (SpoU) family protein; Its function is described as methyltransferase activity, RNA binding, RNA methyltransferase activity; Involved in RNA processing; Located in chloroplast; Contains the following InterPro domains- tRNA/rRNA methyltransferase, SpoU (InterPro-IPR001537), RNA methyltransferase TrmH, group 3 (InterPro-IPR004441), RNA 2-O ribose methyltransferase, substrate binding (InterPro-IPR013123); Has 11661 Blast hits to 11576 proteins in 2636 species- Archae - 7; Bacteria - 7686; Metazoa - 749; Fungi - 216; Plants - 206; Viruses - 3; Other Eukaryotes - [...] (589 aa)
           
  0.629
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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