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AT1G29070 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29070" - Ribosomal protein L34 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G29070Ribosomal protein L34; This protein binds directly to 23S ribosomal RNA (157 aa)    
Predicted Functional Partners:
AT3G54210
50S ribosomal protein L17; This protein binds directly to 23S ribosomal RNA (211 aa)
     
      0.982
RPL21C
50S ribosomal protein L21; This protein binds to 23S ribosomal RNA in the presence of protein L20 (220 aa)
     
      0.981
PSRP5
Plastid-specific 50S ribosomal protein 5 (148 aa)
     
      0.953
RPL27
50S ribosomal protein L27 (198 aa)
     
      0.946
PRPL11
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors (222 aa)
     
   
  0.894
PSRP4
30S ribosomal protein S31 (118 aa)
     
        0.885
RPS9
Ribosomal protein S9; Binds directly to 16S ribosomal RNA (208 aa)
     
        0.885
AT5G47190
50S ribosomal protein L19-2; Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA (229 aa)
     
        0.884
PRPS20
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (202 aa)
     
        0.880
AT4G01310
50S ribosomal protein L5; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (262 aa)
     
        0.879
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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