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AT1G29070 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29070" - 50S ribosomal protein L34, chloroplastic in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G2907050S ribosomal protein L34, chloroplastic; This protein binds directly to 23S ribosomal RNA (157 aa)    
Predicted Functional Partners:
AT4G01310
50S ribosomal protein L5, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (262 aa)
     
      0.997
PRPS20
Chloroplast 30S ribosomal protein S20, putative; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family (202 aa)
     
      0.997
PSRP4
30S ribosomal protein S31, chloroplastic; Plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete; Belongs to the bacterial ribosomal protein bTHX family (118 aa)
     
      0.997
RPS9
Ribosomal protein S9, nuclear encoded component of the chloroplast ribosome (208 aa)
     
      0.997
AT2G43030
50S ribosomal protein L3-1, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (271 aa)
     
      0.997
AT1G64510
Translation elongation factor EF1B/ribosomal protein S6 family protein; Binds together with S18 to 16S ribosomal RNA (207 aa)
     
      0.997
RPL21C
50S ribosomal protein L21, chloroplastic; This protein binds to 23S ribosomal RNA in the presence of protein L20 (220 aa)
     
      0.997
AT3G13120
Ribosomal protein S10p/S20e family protein; Its function is described as structural constituent of ribosome, RNA binding; Involved in translation; Located in small ribosomal subunit; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein S10 subgroup (InterPro-IPR005731), Ribosomal protein S10, conserved site (InterPro-IPR018268), Ribosomal protein S10 (InterPro-IPR001848); Belongs to the universal ribosomal protein uS10 family (191 aa)
     
      0.997
emb1473
50S ribosomal protein L13, chloroplastic; Embryo defective 1473 (emb1473); Its function is described as structural constituent of ribosome; Involved in translation, embryo development ending in seed dormancy; Located in thylakoid, ribosome, chloroplast, chloroplast stroma; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L13, bacterial-type (InterPro-IPR005823), Ribosomal protein L13 (InterPro-IPR005822); BEST Arabidopsis thaliana protein match is- Ribosomal protein L13 family protein (TAIR-AT3G01790.2); Has [...] (241 aa)
     
      0.997
PRPL11
50S ribosomal protein L11, chloroplastic; Mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 (222 aa)
     
 
  0.997
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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