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STRS1 protein (Arabidopsis thaliana) - STRING interaction network
"STRS1" - DEA(D/H)-box RNA helicase family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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STRS1DEA(D/H)-box RNA helicase family protein; ATP-dependent RNA helicase required for 60S ribosomal subunit synthesis. Involved in efficient pre-rRNA processing, predominantly at site A3, which is necessary for the normal formation of 25S and 5.8S rRNAs (By similarity); Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily (537 aa)    
Predicted Functional Partners:
AT5G14520
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression. Required for normal root cell growth and differentiation (590 aa)
     
 
  0.979
AT3G23620
Ribosomal RNA processing Brix domain protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleolus; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Brix domain (InterPro-IPR007109); Has 435 Blast hits to 425 proteins in 212 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink) (314 aa)
     
 
  0.967
NOP56
NOP56-like pre RNA processing ribonucleoprotein; NOP56-like protein (522 aa)
   
 
  0.965
AT1G06720
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as GTP binding, GTPase activity; Involved in ribosome biogenesis; Located in nucleus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- AARP2CN (InterPro-IPR012948), Protein synthesis factor, GTP-binding (InterPro-IPR000795), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species- Archae - 49; Bac [...] (1147 aa)
     
 
  0.964
AT1G31660
Bystin-like protein; Contains the following InterPro domains- Bystin (InterPro-IPR007955); Has 475 Blast hits to 467 proteins in 210 species- Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source- NCBI BLink) (444 aa)
     
 
  0.955
AT1G79150
Binding; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CCAAT-binding factor (InterPro-IPR005612), Armadillo-type fold (InterPro-IPR016024), Nucleolar complex-associated (InterPro-IPR011501); Has 3184 Blast hits to 2630 proteins in 361 species- Archae - 21; Bacteria - 280; Metazoa - 1055; Fungi - 428; Plants - 179; Viruses - 26; Other Eukaryotes - 1195 (source- NCBI BLink) (830 aa)
     
 
  0.955
AT3G22660
Probable rRNA-processing protein EBP2 homolog; Required for the processing of the 27S pre-rRNA (By similarity). Plays an important role in plant growth and senescence by modulating ribosome biogenesis in nucleolus. Associates with ribosomes (293 aa)
     
 
  0.954
AT3G16840
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro-IPR000629), DEAD-li [...] (826 aa)
   
 
0.948
AT5G08180
H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs (By similarity) (156 aa)
     
 
  0.947
AT2G37990
Ribosome biogenesis regulatory protein (RRS1) family protein; Involved in ribosome biogenesis (318 aa)
     
 
  0.945
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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