STRINGSTRING
HDG10 protein (Arabidopsis thaliana) - STRING interaction network
"HDG10" - Homeodomain GLABROUS 10 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDG10Homeodomain GLABROUS 10; Probable transcription factor (708 aa)    
Predicted Functional Partners:
AT3G50720
Putative protein kinase (377 aa)
     
   
  0.826
AT1G60400
F-box protein (403 aa)
     
   
  0.799
SUVH7
SU(VAR)3-9 homolog 7; Histone methyltransferase. Methylates ’Lys-9’ of histone H3. H3 ’Lys-9’ methylation represents a specific tag for epigenetic transcriptional repression (693 aa)
     
   
  0.766
AT5G45660
Uncharacterized protein (226 aa)
           
  0.710
VEL2
vernalization5/VIN3-like; Involved in both the vernalization and photoperiod pathways by regulating gene expression (529 aa)
     
   
  0.643
AT1G66630
E3 ubiquitin-protein ligase SINA-like 3; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates (By similarity) (303 aa)
     
   
  0.638
PKR2
PICKLE RELATED 2; Chromatin remodeling factor that represses the expression of embryonic trait genes upon and after seed germination and thus enables the developmental switch to post- germinative growth (1202 aa)
           
  0.630
AT3G49770
Uncharacterized protein (190 aa)
     
   
  0.619
AT5G45670
GDSL esterase/lipase (362 aa)
           
  0.607
AT1G49290
Uncharacterized protein (338 aa)
           
  0.606
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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