STRINGSTRING
PUM9 protein (Arabidopsis thaliana) - STRING interaction network
"PUM9" - Pumilio 9 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUM9Pumilio 9; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs (564 aa)    
Predicted Functional Partners:
AT5G19120
Aspartyl protease family protein (386 aa)
       
 
  0.740
AT1G65500
Uncharacterized protein (86 aa)
           
  0.740
NRPB12
DNA-directed RNA Polymerase II subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA- directed DNA methylation-dependent (RdDM) tr [...] (51 aa)
           
  0.731
SDC
Putative F-box protein (421 aa)
           
  0.670
CAF1b
CCR4- associated factor 1b; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (278 aa)
       
 
  0.637
AT5G10960
Putative CCR4-associated factor 1-10; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (277 aa)
       
 
  0.637
CAF1a
CCR4- associated factor 1a; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (280 aa)
       
 
  0.637
AT3G44240
Putative CCR4-associated factor 1-8; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (239 aa)
       
 
  0.637
AT2G32070
Putative CCR4-associated factor 1-7; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (275 aa)
       
 
  0.637
AT1G80780
Putative CCR4-associated factor 1-6; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (286 aa)
       
 
  0.637
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (15%) [HD]