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PUM9 protein (Arabidopsis thaliana) - STRING interaction network
"PUM9" - Pumilio homolog 9 in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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PUM9Pumilio homolog 9; Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3’ UTR of target mRNA transcripts (564 aa)    
Predicted Functional Partners:
SK9
SKP1-like protein 9; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity) (153 aa)
           
  0.860
ACI1
Uncharacterized protein T10O8_80; Nuclear protein with a lysine-rich domain and a C-terminal serine-rich domain. Interacts with Alcatraz (ALC). ACI1 is mainly expressed in the vascular system. Involved in cell separation during fruit dehiscence (427 aa)
           
  0.840
AT5G41830
RNI-like superfamily protein; Contains the following InterPro domains- FBD-like (InterPro-IPR006566), Leucine-rich repeat 2 (InterPro-IPR013101); BEST Arabidopsis thaliana protein match is- F-box/RNI-like superfamily protein (TAIR-AT4G00320.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (463 aa)
           
  0.808
AT4G01985
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (579 aa)
           
  0.808
AT1G21940
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G21950.1); Has 19 Blast hits to 12 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (183 aa)
           
  0.808
MLO13
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several [...] (478 aa)
           
  0.773
FBD1
FBD-associated F-box protein (FBD1); Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), FBD (InterPro-IPR013596), F-box domain, Skp2-like (InterPro-IPR022364), FBD-like (InterPro-IPR006566), Leucine-rich repeat 2 (InterPro-IPR013101); BEST Arabidopsis thaliana protein match is- F-box/RNI-like superfamily protein (TAIR-AT1G69630.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (459 aa)
           
  0.769
AT2G40250
SGNH hydrolase-type esterase superfamily protein; Its function is described as hydrolase activity, acting on ester bonds, carboxylesterase activity; Involved in lipid metabolic process; Located in endomembrane system; Expressed in sperm cell, sepal, pedicel; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Lipase, GDSL (InterPro-IPR001087), Esterase, SGNH hydrolase-type (InterPro-IPR013830); BEST Arabidopsis thaliana protein match is- GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR-AT2G31540.1); Has 3497 Blast hit [...] (361 aa)
           
  0.769
UBP19
Ubiquitin carboxyl-terminal hydrolase 19; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity); Belongs to the peptidase C19 family (672 aa)
           
  0.769
AT2G17845
NAD(P)-binding Rossmann-fold superfamily protein; Its function is described as oxidoreductase activity, binding, catalytic activity; Involved in oxidation reduction, metabolic process; Expressed in sepal, male gametophyte, carpel; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Short-chain dehydrogenase/reductase, conserved site (InterPro-IPR020904), NAD(P)-binding domain (InterPro-IPR016040), Glucose/ribitol dehydrogenase (InterPro-IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro-IPR002198); BEST Arabidopsis [...] (312 aa)
           
  0.769
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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