STRINGSTRING
AT1G42960 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G42960" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G42960Uncharacterized protein (168 aa)    
Predicted Functional Partners:
AT3G52230
Uncharacterized protein (145 aa)
     
   
  0.702
AT3G53560
Tetratricopeptide repeat domain-containing protein (340 aa)
   
     
  0.635
AT1G52220
Uncharacterized protein; Determines thylakoid architecture by inducing membrane curvature (156 aa)
   
     
  0.631
AT1G33810
Uncharacterized protein (138 aa)
     
   
  0.605
AT5G14910
Heavy metal transport/detoxification superfamily protein (178 aa)
     
   
  0.564
AT3G32930
Uncharacterized protein (249 aa)
     
   
  0.540
FAP1
Fatty-acid-binding protein 1; Fatty-acid-binding protein. Interacts preferentially with saturated fatty acid. May be involved in alpha-linolenic (C18-3) metabolism (279 aa)
     
   
  0.515
AT5G03900
Iron-sulfur assembly-like protein (523 aa)
           
  0.504
AT4G13590
Uncharacterized protein (359 aa)
           
  0.504
AT4G16450
Uncharacterized protein (106 aa)
     
   
  0.501
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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