STRINGSTRING
AT1G49800 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49800" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49800Uncharacterized protein (108 aa)    
Predicted Functional Partners:
AT3G06090
Uncharacterized protein (79 aa)
           
  0.915
AT2G23270
Uncharacterized protein (86 aa)
           
  0.914
AT5G43066
Uncharacterized protein (74 aa)
           
  0.911
AT4G37295
Uncharacterized protein (86 aa)
           
  0.911
AT4G37290
Uncharacterized protein (84 aa)
           
  0.911
AT4G28460
Uncharacterized protein (72 aa)
           
  0.911
AT4G34600
Uncharacterized protein (83 aa)
           
  0.864
AT2G16385
Uncharacterized protein (83 aa)
           
  0.864
AT5G05300
Uncharacterized protein (102 aa)
           
  0.740
AT1G47485
Uncharacterized protein (91 aa)
     
   
  0.732
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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