STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
ABCI1ABC transporter I family member 1; Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data (229 aa)    
Predicted Functional Partners:
ABCI2
Encodes a mitochondria-encoded cytochrome c biogenesis protein
    
 
 0.806
ABCI19
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; Expressed in 8 plant structures; Expressed during petal differentiation and expansion stage, D bilateral stage; Contains the following InterPro domains: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G44110.1); Has 185812 Blast hits to [...]
      
 0.733
ABCI7
Protein ABCI7, chloroplastic; Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data
      
 0.700
ABCI20
Member of NAP subfamily
      
 0.696
CCMH
Cytochrome c-type biogenesis CcmH-like mitochondrial protein; Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2
 
   
 0.662
HCF208
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic; Required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Controls the conversion of apocytochrome b6 to holocytochrome b6. Required for covalent binding of the c-type heme to cytochrome b6
    
   0.655
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Encodes a member of the NAP subfamily of ABC transporters; Belongs to the ABC transporter superfamily. ABCI family
      
 0.646
ABCF3
Member of GCN subfamily; Belongs to the ABC transporter superfamily. ABCF family. EF3 (TC 3.A.1.121) subfamily
   
 
 0.645
ABCI12
Cobalt ion transmembrane transporters; Its function is described as cobalt ion transmembrane transporter activity; Involved in cobalt ion transport, cobalamin biosynthetic process; Located in chloroplast; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains: Cobalt transport protein (InterPro:IPR003339); Has 2014 Blast hits to 2014 proteins in 922 species: Archae - 36; Bacteria - 1790; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink)
     
 0.625
ABCI4
Cytochrome C assembly protein; Its function is described as heme transporter activity; Involved in cytochrome complex assembly, respiratory chain complex IV assembly, heme transport, protein complex assembly; Located in membrane; Contains the following InterPro domains: Cytochrome c-type biogenesis protein CcmC (InterPro:IPR003557), Cytochrome c assembly protein (InterPro:IPR002541); BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis 256 (TAIR:ATMG00900.1); Has 3677 Blast hits to 3677 proteins in 926 species: Archae - 29; Bacteria - 1762; Metazoa - 2; Fungi - 0; Plants [...]
     
 0.621
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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