T8O5.90 protein (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T8O5.90

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial. (843 aa)

Predicted Functional Partners:

RPS2A

0.802

RPS2B

0.802

PPR596

0.781

TMN12

0.651

TMN5

0.638

TMN4

0.545

PNM1

0.545

TMN1

0.485

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNM1	PPR596	Q9FME4	Q9C977	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	0.518
PNM1	RPS2A	Q9FME4	Q8L8Y0	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	0.407
PNM1	T8O5.90	Q9FME4	O49711	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	Pentatricopeptide repeat-containing protein At4g21880, mitochondrial.	0.545
PNM1	TMN1	Q9FME4	Q940G0	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	Transmembrane 9 superfamily member 1.	0.760
PNM1	TMN4	Q9FME4	Q9FHT4	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	Transmembrane 9 superfamily member 4; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.653
PNM1	TMN5	Q9FME4	F4HW17	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	Transmembrane 9 superfamily member 5.	0.546
PPR596	PNM1	Q9C977	Q9FME4	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	0.518
PPR596	RPS2A	Q9C977	Q8L8Y0	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	0.666
PPR596	RPS2B	Q9C977	Q93VB8	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	40S ribosomal protein S2-2; Belongs to the universal ribosomal protein uS5 family.	0.615
PPR596	T8O5.90	Q9C977	O49711	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	Pentatricopeptide repeat-containing protein At4g21880, mitochondrial.	0.781
PPR596	TMN12	Q9C977	F4JRE0	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	Transmembrane 9 superfamily member 12; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.601
RPS2A	PNM1	Q8L8Y0	Q9FME4	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily.	0.407
RPS2A	PPR596	Q8L8Y0	Q9C977	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	0.666
RPS2A	RPS2B	Q8L8Y0	Q93VB8	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S2-2; Belongs to the universal ribosomal protein uS5 family.	0.724
RPS2A	T8O5.90	Q8L8Y0	O49711	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	Pentatricopeptide repeat-containing protein At4g21880, mitochondrial.	0.802
RPS2A	TMN12	Q8L8Y0	F4JRE0	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	Transmembrane 9 superfamily member 12; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.479
RPS2A	TMN5	Q8L8Y0	F4HW17	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	Transmembrane 9 superfamily member 5.	0.439
RPS2B	PPR596	Q93VB8	Q9C977	40S ribosomal protein S2-2; Belongs to the universal ribosomal protein uS5 family.	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial.	0.615
RPS2B	RPS2A	Q93VB8	Q8L8Y0	40S ribosomal protein S2-2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S2-1; Belongs to the universal ribosomal protein uS5 family.	0.724
RPS2B	T8O5.90	Q93VB8	O49711	40S ribosomal protein S2-2; Belongs to the universal ribosomal protein uS5 family.	Pentatricopeptide repeat-containing protein At4g21880, mitochondrial.	0.802