STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBD9LOB domain-containing protein 9; Belongs to the LOB domain-containing protein family. (124 aa)    
Predicted Functional Partners:
LBD42
LOB domain-containing protein 42; Belongs to the LOB domain-containing protein family.
      
 0.905
LBD26
LOB domain-containing protein 26; Belongs to the LOB domain-containing protein family.
      
 0.826
LBD32
LOB domain-containing protein 32; Belongs to the LOB domain-containing protein family.
      
 0.825
LBD39
LOB domain-containing protein 39.
      
 0.791
LBD40
LOB domain-containing protein 40.
      
 0.784
LBD41
LOB domain-containing protein 41.
      
 0.635
LBD38
LOB domain-containing protein 38; Belongs to the LOB domain-containing protein family.
      
 0.598
LBD37
LOB domain-containing protein 37.
      
 0.540
RH10
DEAD-box ATP-dependent RNA helicase 10; Involved in leaf polarity establishment by functioning cooperatively with AS2 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures. Involved in the processing of pre-rRNA intermediates at high temperatures; Belongs to the DEAD box helicase family. DDX47/RRP3 subfamily.
      
 0.400
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.