STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLC-BChloride channel protein CLC-b; Voltage-gated chloride channel; Belongs to the chloride channel (TC 2.A.49) family. (780 aa)    
Predicted Functional Partners:
CLC-F
Chloride channel protein CLC-f; Voltage-gated chloride channel.
  
 
 
 0.940
CLC-E
Chloride channel protein CLC-e; Voltage-gated chloride channel; Belongs to the chloride channel (TC 2.A.49) family.
  
 
 
 0.939
NPF5.11
Protein NRT1/ PTR FAMILY 5.11.
   
 
 0.808
NPF5.16
Protein NRT1/ PTR FAMILY 5.16; Belongs to the PTR2/POT transporter (TC 2.A.17) family.
   
 
 0.799
NPF5.12
Protein NRT1/ PTR FAMILY 5.12.
   
 
 0.783
CBSDUFCH1
Putative DUF21 domain-containing protein At3g13070, chloroplastic.
     
 0.781
SETH3
Probable arabinose 5-phosphate isomerase; Catalyzes the reversible aldol-ketol isomerization between D- ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P). Belongs to the SIS family. GutQ/KpsF subfamily.
      
 0.720
G3Pp4
Putative glycerol-3-phosphate transporter 4.
   
  
 0.718
NPF6.3
Protein NRT1/ PTR FAMILY 6.3; Dual affinity nitrate transporter. Involved in proton- dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be i [...]
   
 
 0.676
NPF6.2
Protein NRT1/ PTR FAMILY 6.2; Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport; Belongs to the PTR2/POT transporter (TC 2.A.17) family.
   
 
 0.650
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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