STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZFN3Zinc finger CCCH domain-containing protein 57. (375 aa)    
Predicted Functional Partners:
SDN3
Small RNA degrading nuclease 3; 3'-5' exonuclease degrading single-stranded small RNAs.
    
 
 0.808
SDN2
Small RNA degrading nuclease 2; 3'-5' exonuclease degrading single-stranded small RNAs; Belongs to the REXO1/REXO3 family.
    
 
 0.793
GDU3
Protein GLUTAMINE DUMPER 3; Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction; Belongs to the GLUTAMINE DUMPER 1 (TC 9.B.60) family.
      
 0.792
RPP2B-2
60S acidic ribosomal protein P2-2; Plays an important role in the elongation step of protein synthesis; Belongs to the eukaryotic ribosomal protein P1/P2 family.
    
 
 0.788
GRXC3
Glutaredoxin-C3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins (By similarity); Belongs to the glutaredoxin family. CPYC subfamily.
      
 0.785
SDN1
Small RNA degrading nuclease 1; 3'-5' exonuclease degrading single-stranded small RNAs. Belongs to the REXO1/REXO3 family.
    
 
 0.775
CPSF160
Cleavage and polyadenylation specificity factor subunit 1; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction; Belongs to the CPSF1 family.
      
 0.651
T2K10.14
3'-5'-exoribonuclease family protein.
    
  0.606
SCL8
Scarecrow-like protein 8; Probable transcription factor involved in plant development.
      
 0.599
GEK1
D-aminoacyl-tRNA deacylase; Hydrolyzes D-aminoacyl-tRNA into D-amino acid and free tRNA. Broad specificity toward the amino acid, but strict specificity toward the D-isomer. Seems to be required for ethanol tolerance.
    
 0.572
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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