STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F18B13.25Probable polygalacturonase At1g80170; Belongs to the glycosyl hydrolase 28 family. (444 aa)    
Predicted Functional Partners:
PME55
Probable pectinesterase 55; Acts in the modification of cell walls via demethylesterification of cell wall pectin; Belongs to the pectinesterase family.
      
 0.881
PME16
Probable pectinesterase/pectinesterase inhibitor 16; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the N-terminal section; belongs to the PMEI family.
      
 0.792
PME32
Probable pectinesterase/pectinesterase inhibitor 32; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the N-terminal section; belongs to the PMEI family.
      
 0.785
SSL9
Protein STRICTOSIDINE SYNTHASE-LIKE 9; Belongs to the strictosidine synthase family.
      
 0.785
TBL38
Protein trichome birefringence-like 38; May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins (By similarity). May be involved in the specific O-acetylation of cell wall polymers (By similarity).
      
 0.759
SSL4
Protein STRICTOSIDINE SYNTHASE-LIKE 4; Belongs to the strictosidine synthase family.
      
 0.759
SSL3
Protein STRICTOSIDINE SYNTHASE-LIKE 3.
   
  
 0.738
AGP13
Arabinogalactan protein 13; Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death; Belongs to the AG-peptide AGP family.
      
 0.719
F10M23.170
O-Glycosyl hydrolases family 17 protein; Belongs to the glycosyl hydrolase 17 family.
      
 0.717
PAE11
Pectin acetylesterase 11; Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties; Belongs to the pectinacetylesterase family.
      
 0.716
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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